The Brown Lab at Virginia Tech is an interdisciplinary research group specializing in computational biochemistry, molecular modeling, and AI-enabled computer-aided drug discovery. We develop and apply computational methods, MD simulations, and machine learning approaches to investigate protein structure–function relationships, conformational dynamics, protein aggregation, and molecular interactions. Our research focuses on understanding the mechanisms governing amyloid assembly, protein–membrane interactions, and the influence of complex biological environments on protein behavior, with applications in neurodegenerative and metabolic diseases. We also advance structure-based drug discovery through the development of predictive methods for identifying and optimizing small molecules and peptides, with particular emphasis on antiviral drug discovery, antimicrobial resistance, kinases, and challenging protein–protein interactions.